Atomic naming in PDB consists of 4 character field: atomic symbol (2 char), remoteness indicator (1 char), branch designator (1 char).
Remoteness indcator uses Greek letter distance abbreviation. In order of increasing distance, these are A for alpha, B for beta, G for gamma, D for delta, E for epsilon, Z for zeta, and H for eta.
Branch designator: digit designating the branch direction; left blank if the sidechain is unbranched.
Color scheme: Red=Oxygen; Gray=Carbon; Blue=Nitrogen; Cyan=Hydrogen; Yellow=Sulphur
Aspartic acid
| AA | D |
| Code | Asp |
| Fullname | Aspartic acid |
| Side chain type | acidic |
| Mass | 133.1 |
| pI | 2.85 |
| pK1(a-COOH) | 1.99 |
| pK2(a-+NH3) | 9.9 |
| pKr (R) | 3.9 |
| hydrophobic | - |
| positive | - |
| negative | X |
| polar | X |
| charged | X |
| small | X |
| tiny | - |
| aromatic | - |
| aliphatic | - |
| van der Waals volume | 91 |
| Remarks
|
|