- Eval3DStruct
- Usage:
Eval3DStruct <pdbfile>
- -c: chain_flag. (default:
evaluation performed on all chains
- -d: draw_flag. (default: no
contact map drawn)
- Example:
Eval3DStruct 1H24.pdb -c AB -d
- Perform evaluation on structure
of chain A and B.
- 1H24.pdb_A.bmp and 1H24.pdb_B.bmp contact maps generated.’
- RQA3D
- Usage:
RQA3D <filename>
- -c: chain flag. (default: RQA perfomed
on all chains)
- -c ABC means perform RQA
on chain A, B and C
- -d: draw flag for contact map. (default:
no bmp map generated)
- -f: result flag. (default: only %rec
displayed)
- Example:
RQA3D 1H24.pdb -c AB -d -f
- RQA performed on chain A and B of
1H24.pdb.
- Contact maps 1H24.pdb_A.bmp and
1H24.pdb_B.bmp generated
- Full display on RQA results
- RQA1D
- Usage:
RQA1D
- -ip: input type is pdb format.
- -if: input type is fasta format.
- -I: AAIndex ID
- -c: chain_flag. (default: perform RQA on
all chains)
- This option only
available for -ip
- -d: draw_flag. (default: Contact maps
not drawn
- -r: result_flag. (default: Display only
%rec)
- -F: factor_flag (default: 0.2 of mean of
distance matrix
- Example: RQA1D -ip 1H24.pdb -c AB -I MIYS850101
